====== Details View ======
  * The Details View allows you to view and edit parameters that are associated with a construct.  These are
    * Whether the construct is circular or linear
    * The position of the origin of a circular construct
    * The backtranslation profile
  * The Details View also allows you to generate reports about your construct

===== Backtranslation Summary Report =====
  * The Backtranslation Summary provides a text file for any construct within a project, containing:
    * DNA sequence of
      * the whole construct
      * each element
    * A translational map of each Amino Acid element
    * A list of occurrences of motifs and restriction sites that were set to avoid during backtranslation
    * A list of repeats greater in length than those used during backtranslation
    * GC content of the construct
    * Notes
{{:ui:backtranslation_summary.jpg}}
===== Viewing / Editing Construct Parameters =====
=== Converting between linear and circular ===
  * A construct can be converted from circular to linear by right clicking on the construct icon and selecting "convert to linear". (Not yet working in beta version)
    * The origin of the circle will become the left-most base in the linear construct.
  *  A construct can be converted from linear to circular by right clicking on the construct icon and selecting "convert to circular". (Not yet working in beta version)
    * The left-most base in the linear construct will become the origin of the circle.
  * A construct can be converted from circular to linear by right clicking on the "Edit" button in the Details View and then checking (or unchecking) the "Circular" box.
{{:ui:details_view_1.jpg}}
=== Changing the position of the origin ===
  * The origin of a circular construct must be at the beginning of one of its component sequence elements.
    * The origin can be changed by by right clicking on the construct icon and selecting "change origin". (Not yet working in beta version)
      * You will be prompted to select the sequence element that you would like to begin at the origin.
  * Beta version workaround: convert the circular construct to a linear construct, rearrange the elements so that the desired element is at the left end and convert back to circular.
=== Viewing the backtranslation profile ===
  * Backtranslation in GeneDesigner uses a genetic algorithm to avoid getting stuck in suboptimal local minima.
    * Backtranslation profiles can be created and edited from the "Configure" pull down menu at the top of the [[ui:Construct Editor]] 
    * The backtranslation profile allows you to control
      * The genetic algorithm
      * The codon bias table and threshold
      * Unwanted sequences that will be excluded from backtranslated sequences, including 
        * restriction sites 
        * cryptic splice sites
        * ribosome binding sites
      * The size of repeats that the software attempts to eliminate.
   * By storing backtranslation profiles you can use the same parameters for many constructs without having to re-enter the same data every time.
  * More details on backtranslation can be found [[guide:backtranslate | here]]
{{:ui:backtranslation_profile_used.jpg}}
== Profile differences ==
  * The Details View will indicate whether there are differences between the profile applied to a construct, and a profile that may have the same name in the profile manager.
  * This is intended to avoid confusion when
    * Two people share a construct and may have different backtranslation profiles with the same name
    * A backtranslation profile has been edited, but the new values apply only to that construct.